eu.etrap.medusa.significance

Class LogLikelihoodSignificanceImpl

java.lang.Object

eu.etrap.medusa.config.ClassConfig

eu.etrap.medusa.significance.AbstractSignificance

eu.etrap.medusa.significance.LogLikelihoodSignificanceImpl

All Implemented Interfaces:

Significance

public class LogLikelihoodSignificanceImpl
extends AbstractSignificance

Author:

development

Field Summary

Fields inherited from class eu.etrap.medusa.significance.AbstractSignificance

n, PARSER_FILTER_IMPL, scalefactor

Fields inherited from class eu.etrap.medusa.config.ClassConfig

BOOLEAN_DEFAULT, DOUBLE_DEFAULT, FORMAT_IMPL, INT_DEFAULT, LONG_DEFAULT, objConf, objConfCategory, objFormat, strBackupConfFile, STRING_DEFAULT

Constructor Summary

Constructors

Constructor and Description
LogLikelihoodSignificanceImpl() Creates a new instance of LogLikelihoodSignificanceImpl.

Method Summary

Modifier and Type	Method and Description
long	compute(int nab, int na, int nb)
double	computeASDouble(int intnab, int intna, int intnb)
java.lang.String	getAbbreviation()
double	log(double n)
static void	main(java.lang.String[] args)

Methods inherited from class eu.etrap.medusa.significance.AbstractSignificance

computeASDouble, init

Methods inherited from class eu.etrap.medusa.config.ClassConfig

config, getConfiguration, getGlobalProperty, getProperty, getProperty, getStatisticsProperty, loadFormatImpl, selfconfig, setGlobalProperty, setProperty, setProperty, setStatisticsProperty, setStatisticsProperty

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LogLikelihoodSignificanceImpl

public LogLikelihoodSignificanceImpl()

Creates a new instance of LogLikelihoodSignificanceImpl.

Method Detail

compute

public long compute(int nab,
                    int na,
                    int nb)

Specified by:

compute in interface Significance

Overrides:

compute in class AbstractSignificance

computeASDouble

public double computeASDouble(int intnab,
                              int intna,
                              int intnb)

Specified by:

computeASDouble in interface Significance

Overrides:

computeASDouble in class AbstractSignificance

log

public double log(double n)

getAbbreviation

public java.lang.String getAbbreviation()

Specified by:

getAbbreviation in interface Significance

Overrides:

getAbbreviation in class AbstractSignificance

main

public static void main(java.lang.String[] args)